Resumen: Fjords are a globally significant carbon sink with the highest burial rates of organic carbon (OC) per unit area of all marine depositional systems. As many fjords face the impacts of global change, understanding carbon cycling in these estuaries is crucial. We estimated OC sources and degradation state in Northern Patagonia (41°S to 47°S) fjord sediments using radiocarbon, stable isotopes, and chemical biomarkers. Surface sediment OC content ranged from 0.15 to 5.34%. Majority of this OC was modern, although there was a widespread but low petrogenic OC (OCpetro) content of 0.13, 95% confidence interval [0.08–0.18%]. This OCpetro can be the dominant and even sole source of OC to Northern Patagonia sediments in regions with low overall OC contents. There were steep gradients of modern terrestrial OC (OCterr) contributions moving from fjords (∼70%) to broader bays and channels (∼6%), indicating these fjords act as OCterr sinks. There was an apparent decoupling of OCterr and marine OC (OCmar) degradation in sediments, reflected by lignin and amino acid biomarkers. This decoupling likely results from the preferential association of OCmar with minerals, illustrated by high OCmar to surface area ratios (OC/SA; 0.38 mg C m−2) compared to terrestrial OC/SA (0.13 mg C m−2), a continuous supply of OCmar compared to point source inputs of OCterr, as well as the greater sensitivity of OCmar to aerobic degradation. Overall, the Northern Patagonia fjord system is a sink of OCterr, and OC cycling within these fjords will continue to evolve with anthropogenic global change.